Evolutionary couplings from protein and RNA sequence alignments
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Apr 20, 2026 - Jupyter Notebook
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protein-complexes
Here are 13 public repositories matching this topic...
Predicting direct protein-protein interactions with AlphaFold deep learning neural network models.
bioinformatics deep-learning protein-protein-interaction protein-structure-prediction protein-protein-docking protein-complexes alphafold2
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Sep 8, 2024 - Python
Explore the cancer relevance of your gene list
cancer proteins disease-gene-association tcga-data crispr-target protein-protein-interaction co-expression report-generator prioritization genesets high-throughput-screening cancer-survival functional-enrichment-analysis pathway-enrichment-analysis protein-complexes tissue-enrichment-analysis cancer-hallmark-evidence
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Aug 11, 2026 - R
FTDMP is a software system for running docking experiments and scoring/ranking multimeric models.
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Aug 3, 2026 - C++
R package for performing (differential) thermal co-aggregation analysis with TPP datasets
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Sep 18, 2025 - R
🧬 Companion repository for the Methods in Molecular Biology protocol 📓 combining AlphaFold confidence metrics with pyDock energy scoring⚡ for protein–protein complex modeling.
machine-learning bioinformatics structural-biology computational-biology scoring-functions molecular-modeling protein-complexes protein-protein-interactions alphafold pydock alphafold2 colabfold alphafold3
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Sep 6, 2026 - Jupyter Notebook
Reinforcement learning community detection method using known communities
reinforcement-learning community-detection community-detection-algorithm protein-protein-interaction-network protein-complexes
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Aug 3, 2022 - Python
Predict protein complexes from high-throughput data
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Sep 26, 2023 - Python
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 by Super.Complex and CORUM
community-detection supervised-machine-learning protein-protein-interaction-network protein-complexes protein-protein-interactions protein-complex-identification
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Jul 3, 2022 - HTML
Nomenclature and definitions of protein complexes in BEL
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Apr 29, 2019 - Python
Interactive visualizations for protein complexes from hu.MAP 1.0 and hu.MAP 2.0 with RL
reinforcement-learning community-detection protein-protein-interaction-network protein-complexes protein-protein-interactions protein-complex-identification
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Jun 22, 2022 - HTML
Convert FamPlex to BEL
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Aug 13, 2019 - Python
Code for the research article "Exploring functional protein covariation across single cells using nPOP". It is distributed under MIT license.
regulation gene-regulation proteomics sample-preparation single-cell-proteomics protein-complexes single-cell-ananlysis
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Dec 27, 2022 - R
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