A toolkit for identifying gene homologs in closely related species.
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Oct 8, 2024 - Python
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gene-annotation
Here are 16 public repositories matching this topic...
Linux tool for relative mutation rate of different genes across viral strains.
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Mar 4, 2025 - Python
Command-line tool for retrieving and logging human gene annotations from MyGene.info
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Jun 15, 2025 - Python
EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format
bioinformatics gff3 gene-annotation maker gff3-files gene-prediction gff3-format embl-entry embl-format pannzer2
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May 29, 2021 - Python
A NextFlow pipeline for the annotation of gene homologs using SABAT.
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Oct 8, 2024 - Python
Computational Biology With Clicks!
docker aws benchmarking string heatmap machine-learning-algorithms feature-selection gui-application gene-annotation rnaseq combat transcriptomics venn feature-importance rpy2 nested-cross-validation microarrays fastapi gene-algorithm multi-gene-model
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Mar 23, 2026 - Python
Python tool for relative mutation rate of different genes across viral strains.
flask-application gene-annotation neighbor-joining viral-genomics multiple-sequence-alignment github-codespaces mutation-rates
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Mar 4, 2025 - Python
scripts associated with yam genome assembly
coverage assembly ngs dna gene-annotation genome-assembly phasing gene-prediction ngs-pipeline busco
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May 8, 2020 - Python
The related code of the master thesis, "Using deep learning to predict gene structures of the coding genes in DNA sequences of Arabidopsis thaliana"
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Dec 5, 2021 - Python
This project deals with predicting the location of a gene in the human genome based off experimental data
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Jun 11, 2020 - Python
ncRNA identification, annotation and functional prediction
bioinformatics pipeline gene-annotation lncrna ncrna functional-annotation gene-prediction functional-prediction bioinfo lncrna-pipeline ncrna-protein-interactions gene-function
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Dec 21, 2023 - Python
MCP server for MyGene.info API
python bioinformatics genomics mcp gene-expression gene-annotation gene-ontology pathway-analysis model-context-protocol mcp-server fastmcp mygene-info disease-genomics drug-gene-interaction
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Feb 26, 2026 - Python
long read differential expression analysis and splice variant analysis
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Mar 4, 2026 - Python
A pipeline for identification and annotation of transposable element (TE) insertions using next generation sequencing (NGS) data.
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Aug 5, 2021 - Python
MetaDome is aimed at professionals in the (bio-)medical field of human genetics who wish to visualize the position of their mutation of interest in the context of general population-based genetic variation and provide detailed information of pathogenic variants found across homologous domain positions.
genetics proteins gene-annotation genes pathogenicity variant-annotations protein-domains pathogenic-variants protein-annotation genetic-tolerance domain-homology variant-interpretation
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Feb 11, 2026 - Python
The post-TOGA processing pipeline
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Jan 28, 2026 - Python
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