neighbor-joining

Distance-based Phylogenetic Placer

TreeBeST: Tree Building guided by Species Tree (Ensembl Compara modifications)

Phylogeographic workflow using sliding-windows, RAxML-NG and FastTree

Production-grade genpark-neighbor-joining-phylogenetic-tree-skill skill for AI agents

Production-grade genpark-neighbor-joining-phylogenetic-tree-skill skill for AI agents

GPU accllerated program for Neighbor-Joining algorithm of Biopython library with PyCUDA

Fast neighbor-joining algorithms for phylogenetic tree construction in R

Phylogenetic Insights from Turtles, Lizards, Crocodiles and Birds Sequences. Jupyter Notebook with tree construction

Rapid Neighbor-Joining phylogenetic tree creation method implementation for Node.js

Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.

For Species Tree estimation using similarity matrix, distance matrix and NJ (FastME)

Explore sequence alignments and phylogenetic trees in a web browser

Fast Rust port of GrapeTree's tree/distance engine (experimental)

Python tool for relative mutation rate of different genes across viral strains.

C++ tool for constructing phylogenetic trees from DNA sequences using NJ, UPGMA, Fitch-Margoliash and Minimum Evolution algorithms

Web App for constructing phylogenetic trees using various clustering methods and algorithms (like Neighbor-Joining, UPGMA or Maximum Parsimony)

Analysis pipeline and manuscript materials comparing influenza antigenic distance metrics with phylogenetic tree distances

NumPy-based tropical geometry and phylogenetic MLOps pipeline for viral RNA/DNA sequences