Comprehensive genome annotation pipeline for plant combining EVM/PASA, GETA, AUGUSTUS and Helixer with semi-supervised filtering for high-quality gene models.

Spurious PROtein Unprediction Tool

Deep learning based method called hist2RNA to predict the expression of genes using digital images of stained tissue samples

🔮🧬 Gene prediction tool

Prokaryotic gene prediction using Shine-Dalgarno motif and reading frame detection 🦠

A toolkit for identifying gene homologs in closely related species.

ncRNA identification, annotation and functional prediction

The AugusMake pipeline is a Snakemake-based workflow for generating gene annotations using the Augustus software. AugusMake can perform gene predictions using any combination of the three methods: ab initio, with extrinsic hints, or by training a new species.

Pogigwasc gene prediction of Loxodes magnus genome

Python3 wrapper for parallelized gene prediction using Prodigal

EMBLish aims to provide a tool for converting gene prediction files such as Maker output file and gene annotation files such as Pannzer2 output file into the EMBL format

This project deals with predicting the location of a gene in the human genome based off experimental data

scripts associated with yam genome assembly

automatically create GLIMMER training materials from GenBank records

Prediction of metastasis sites for breast cancer cells

Scans fasta sequences for putative viruses - uses prokka, blast, and hhpred to predict ORFs and gene products