[Xanthomonas campestris pv. campestris 8004] GCModeller genomics Modelling Project

Interactive web app to compute and display statistics for genomes or DNA sequences of different organisms

GPSeq sequencing data analysis pipeline

Genome Analysis Toolkit

Codes for genome sequencing class being taught by Tychele N. Turner, Ph.D.

Integrated tool for hairpins extraction from RNA Sequences

acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.

Scripts and data associated with "Genome-wide signatures of synergistic epistasis during parallel adaptation in a Baltic Sea copepod"

An R package to compute the autimorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group as described in the paper [Genomic Abelian Finite Groups](https://www.biorxiv.org/content/10.1101/2021.06.01.446543v2)

Monthly updated list of diagnostically relevant genes

Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.

Analysis of codon positional dependency

Implement R-prime measure of linkage disequilibrium

Analysis and monitoring of the genomic and proteomic behavior of SARS-CoV-2 in Brazil through bioinformatics and Data Science

Circos-based genome map visualization tool

Process raw Oxford Nanopore data, generate html report, and do de novo assembly (plasmid, amplicon, bacterial genome)

A semi-automatic coronavirus genome annotation tool

Microarray Analysis of Differential Expression

📐R implementation of Bias Elimination Algorithm for Deep Sequencing

visualization of somatic mutations in cancer