Regional Association of Methylation variability with the Exposome and geNome (RAMEN) is an R package whose goal is to identify Variable Methylated Regions (VMRs) in microarray DNA methylation data. Additionally, using Genotype (G) and Environmental (E) data, it can identify which G, E, G+E or GxE model better explains this variability.

Genome Interval Arithmetic in R

Genomic Data Retrieval with R

Process raw Oxford Nanopore data, generate html report, and do de novo assembly (plasmid, amplicon, bacterial genome)

acorn is an R package that examines various features of de novo variants including subsetting DNVs by individual, variant type, or genomic region; calculating features including variant change counts, lengths, and presence/absence at CpG sites; and characteristics of parental age and number of DNVs.

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

An R/Bioconfuctor package for association analysis of genomic regions based on permutation tests

Circos-based genome map visualization tool

an R/Shiny application for interactive creation of non-circular plots of whole genomes

Extract Sequence from Genome According to Annotation File

El genoma pequeño - analysis workflow for "the little genome." This repository holds a computational workflow to analyze the mitochondrial genome.

An R package to compute the autimorphisms between pairwise aligned DNA sequences represented as elements from a Genomic Abelian group as described in the paper [Genomic Abelian Finite Groups](https://www.biorxiv.org/content/10.1101/2021.06.01.446543v2)

Matrix dissimilarity from the differences of Moments and sparsity

dcHiC: Differential compartment analysis for Hi-C datasets

cgmisc is an R package for data analyses and visualisation of GWAS results

Monthly updated list of diagnostically relevant genes

examination of genome size across all kingdoms

Analysis and monitoring of the genomic and proteomic behavior of SARS-CoV-2 in Brazil through bioinformatics and Data Science

visual analysis of your VCF files

DeepGenomeScan: A Deep Learning Approach for Whole Genome Scan (WGS) and Genome-wide Association Studies (GWAS)