gwas

Cloud-native genomic dataframes and batch computing

Scalable genetics toolkit

Pan-genome wide association studies

Integrating GWAS and spatial transcriptomics for spatially resolved mapping of cells associated with human complex traits.

Python command line tool for Multi-Trait Analysis of GWAS (MTAG)

PolyFun (POLYgenic FUNctionally-informed fine-mapping)

SEER, reimplemented in python 🐍🔮

Python API for comprehensive GWAS analysis using GEMMA

Open Targets python framework for post-GWAS analysis

Python toolkit for fast genotype I/O, ancestry analysis, population-genetics statistics, genotype QC, GWAS, and visualization

A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.

Convert GWAS summary statistics to VCF

kGWASflow is a Snakemake workflow for performing k-mers-based GWAS.

GWAS summary statistics files QC tool

Efficient Permutation-based GWAS for Normal and Skewed Phenotypic Distributions

Variational Inference of Polygenic Risk Scores

Ancestry and haplotype aware simulation of genotypes and phenotypes for complex trait analysis

Modeling and Analysis of (Statistical) Genetics data in python

A package for detecting epistasis by machine learning