Heritability in plant breeding - R and SAS code examples

Sample code for ldsc analyses in UKBB

Code and Tutorials for Running the MArginal ePIstasis Test (MAPIT)

MultiVariate Polygenic Mixture Model

A library for calculating penetrance tables of any bivariate epistasis model.

Developmental version of R package BayesTwin

Topological Learning for Brain Networks (Annals of Applied Statistics; MICCAI 2021)

Containerized workflow for analysis of human diabetic kidney disease by snRNA-seq and snATAC-seq

Highly Efficient Imaging Genetics (HEIG)

The project focused on the analysis of foxes from 3 different farms and the subsequent presentation of trait heritability results, genetic trends, breeding values and relationship matrix.

examples Python OOP

This repository contains the R package ugnome which is a collection of utility functions for statistical genetic analyses.

Which peak–gene linkage method best captures IBD GWAS heritability? Benchmark of 5 published methods on the Hickey 2023 colon single-cell atlas using stratified LD-score regression.

Non-Additive LD Score Regression

gwas workflow from raw intensity data to in-silico functional mapping

Regional Heritability Analysis is a software package for estimating regional heritability of small genomic segments.

Ce projet contient des programmes et algorithmes développés en C++, couvrant divers concepts de programmation.

INSA Rennes 4EII cpp Labs

R package for wrangling and summarising 'animal' brms models