A tool to analyse HiChIP data

Accurate and flexible loops calling tool for 3D genomic data.

Resources for IoT security research

A preprocessing and QC pipeline for HiChIP data

Repo containing scripts for HiChIP data analysis

Identification of enriched motif pairs from chromatin interaction data

Identification of enriched motif pairs from chromatin interaction data

Statistically Significant loops from HiChIP data

An awesome Hi-C + ChIP (HiChIP) sequencing pipeline.

Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.

Analysis scripts and other code written during my time at Penn.

Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.

Irreproducible discovery rate for genomic interaction data