Irreproducible discovery rate for genomic interaction data
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Sep 29, 2025 - R
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hichip
Here are 13 public repositories matching this topic...
Bioinformatic tools (R scripts) for the analysis of Absolute Quantification of Architecture (AQuA-HiChIP) style data.
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Sep 12, 2025 - R
Analysis scripts and other code written during my time at Penn.
python bash bioinformatics rna-seq r simulation computational-biology chip-seq orca hic bash-scripting bash-tool single-cell-genomics hichip upenn polymer-simulation university-of-pennsylvania loop-extrusion
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Aug 12, 2025 - TeX
Enhanced and elegant flexible peak/loop/domain -calling and analysis tool for 1D/3D genomic data.
python clustering next-generation-sequencing domains loops hi-c montage 3d-genome peaks chia-pet chromatin-interaction stripes hichip bioinformatics-tool trac-looping cloops2 3d-genome-visualization differential-enriched-loops un-limited-resolution rehoboam
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Jun 17, 2025 - Python
Identification of enriched motif pairs from chromatin interaction data
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Feb 4, 2024 - R
Identification of enriched motif pairs from chromatin interaction data
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Feb 4, 2024 - R
A preprocessing and QC pipeline for HiChIP data
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Jul 11, 2022 - HTML
Accurate and flexible loops calling tool for 3D genomic data.
python bioinformatics algorithm pipeline tool clustering ngs sequencing example-data hi-c dbscan 3d-genome chia-pet chromatin-interaction stripes hichip chromatin-loops chromatin-stripes loops-calling trac-looping
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May 19, 2022 - Python
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