hmdb

naive index and query scripts for free reference bioinformatics datasets

Two-stream CNNs for Video Action Recognition using Stacked Optical Flow. Implemented in Keras on HMDB-51 dataset.

The Knowledge Graph (KG) built using data from HMDB

metabolomicsDB is a collection of three open-source command-line tools and an API. The tools create a meta-database of HMDB and ChEBI, while the API allows others to read the meta-database and use it on their own projects.

MetaboFlow: Untargeted LC-MS Metabolomics Quad-Workflow Pipeline | 非靶向代谢组学四工作流集成分析系统 | 4 pathway enrichment workflows (ORA+QEA) | Nature-quality figures | R-based | tidymass + MetaboAnalystR + limma

This repository contains a function for scraping the HMDB database for metabolomics annotation.

Fault-tolerant streaming crawler for HMDB Endogenous/Animal flags

本项目存放自动化数据处理的一些脚本，大家需要自取。爬取并比对QI&HMDB中的数据，爬取pubmed文献。

A Python toolkit to identify and score endogenous human metabolites from HMDB XML metadata

MetaboMatch is a Python package and command-line interface (CLI) tool designed to match metabolomics compound names against the Human Metabolome Database (HMDB)