Im Datensatz "Abwassersurveillance AMELAG" des Robert Koch-Instituts und Umweltbundesamts werden Daten aus der Überwachung von Infektionserregern im Abwasser bereitgestellt. Die Daten zur SARS-CoV-2-Viruslast werden seit Februar 2022 in einem bundesweiten Netzwerk von Kläranlagen, Laboren und Behörden erhoben. Seitdem wurden die Daten um die Vir...

The Moving Epidemic Method R Package

A R statistical software package for estimating attributable influenza morbidity & mortality

The Moving Epidemic Method Shiny Web Application

Estimating the generation time for influenza transmission using household data in the United States

Data on US ILI, influenza pos lab tests, and total influenza cases from 1998-2019

R package providing helper functions for CDC forecast hub maintenance and report generation.

Shiny app for FSN model comparison

Query the 'CMU' 'DELPHI' Epidemiological Data 'API' (package wrapper https://github.com/cmu-delphi/delphi-epidata/blob/master/src/client/delphi_epidata.R)

Linked Multilocus Genotype by Sequencing (LMGSeq) applied to high-throughput quantification of genetic exchange among diverse human Influenza A virus strains

Understanding spatiotemporal clustering of seasonal influenza in the United States

Kieran et al. 2024 - npj Viruses - influenza A transmission thersholds

Kieran et al. 2025 - Scientific Reports. R code for lethality/morbidity machine learning with tissues.

Accompanies the manuscript "Spatial aggregation choice in the era of digital and administrative surveillance data"

Pulit-Penaloza et al. 2026 - Nature Communications. Advancing A(H5N1) influenza risk assessment in ferrets through comparative evaluation of airborne virus shedding patterns R code.

Shiny App: Project CovFlu - A Comparative Exploration of Covid-19 and Influenza Demographics in the U.S.

Kieran et al. 2024 - Communication Biology - R code for machine learning in influenza infected ferrets

Source code and data files accompanying "Parallel evolution between genomic segments of seasonal human influenza viruses reveals RNA-RNA relationships" by Jones et al eLife 2021.

Influenza A PB1 FASTA QC, alignment (MAFFT), and country-balanced sampling (R)

Code repository for published manuscript