Shiny app for FSN model comparison

Query the 'CMU' 'DELPHI' Epidemiological Data 'API' (package wrapper https://github.com/cmu-delphi/delphi-epidata/blob/master/src/client/delphi_epidata.R)

A R statistical software package for estimating attributable influenza morbidity & mortality

Data on US ILI, influenza pos lab tests, and total influenza cases from 1998-2019

Shiny App: Project CovFlu - A Comparative Exploration of Covid-19 and Influenza Demographics in the U.S.

Source code and data files accompanying "Parallel evolution between genomic segments of seasonal human influenza viruses reveals RNA-RNA relationships" by Jones et al eLife 2021.

Accompanies the manuscript "Spatial aggregation choice in the era of digital and administrative surveillance data"

COVID's Influence on Influenza

Code to accompany "Use of Patient-Reported Symptom Data in Clinical Decision Rules for Predicting Influenza in a Telemedicine Setting" by Billings et al, JABFM 2023

Kieran et al. 2024 - npj Viruses - influenza A transmission thersholds

The Moving Epidemic Method Shiny Web Application

The Moving Epidemic Method R Package

Shiny-based, Dockerized visual tool for simulating epidemic dynamics with adjustable parameters.

Kieran et al. 2025 - Scientific Reports. R code for lethality/morbidity machine learning with tissues.

Influenza A PB1 FASTA QC, alignment (MAFFT), and country-balanced sampling (R)

Code repository associated with Brierley et al., 'An AI for AI..'

Pulit-Penaloza et al. 2026 - Nature Communications. Advancing A(H5N1) influenza risk assessment in ferrets through comparative evaluation of airborne virus shedding patterns R code.

Kieran et al. 2024 - Communication Biology - R code for machine learning in influenza infected ferrets