GIMSAN: motif-finder with biologically realistic and reliable statistical significance analysis
Bioinformatics pipeline for binding sites prediction
Network Science toolbox focused on generalizing centrality and community structure
A Motif Search Algorithm based on a string matching principles
Python bindings for the TFM-Pvalue program.
An open-source library of algorithms to analyse time series in GPU and CPU.
To reproduce analysis and methods presented in Bell and Paegle (2021)
Introduced here is a method to measuring social coordination and the signaling value of objects. Accompanies the paper Bell (2020), and includes an analysis of triad classification tasks in the Kingdom of Tonga and among University of Utah students.
Threshold and p-value computations for Position Weight Matrices
A program to compute the optimal sequence alignment of two DNA strings
Repository for "Data Mining - Advanced Topics and Applications" projects exam.
Sequence Logo - block style with axes (native Java Script) is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet.
Sequence Logo - relative style with axes is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
Sequence Logo - block style is an alternative that provides full control over how the graphics of a Sequence Logo should look like. All the inner workings of this open source application are written in native javascript. The application is independent of the internet once it is saved as a html file.
A proof-of-concept library for motif analysis using MDL techniques.
Loop detector on triplet formatted data
Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline
An object-oriented Python library for simulating biological sequences
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