Parallel / multithreading / multiple threads version of Prinseq

eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data

Variant annotation and filtration server ALAPY Genome Explorer

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

WIP & POC: Count Viral and other non-human genome signatures in Human NGS data

Pooling Illumina NextSeq 500 fastq files

A simplified pipeline for ctDNA sequencing data analysis

One-stop shop for one-click NGS analyses from the command-line

scripts for assembly and analysis of RAD-seq data

Accel Amplicon HS wMID

bcftools singularity container

Mapping, snps calling, phylogeny

DNAnexus Workflow for RNA-seq data

Scripts for RNA-seq, Windows subsystem on Linux

This is the repository of the Genomics Core High Performance Computing for Genomics workshop.

Chip-Seq analysis

Katacoda Scenarios

Dockstore implementation of CGP core WXS analysis

Dockstore implementation of CGP core WGS analysis