A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

Dockerised Next Generation Sequencing Pipeline (QC, Align, Calling, Annotation)

Micro 612 genomics workshop

Download sequencing data and metadata from GSA, SRA, ENA, and DDBJ databases.

A simplified pipeline for ctDNA sequencing data analysis

VAPiD: Viral Annotation and Identification Pipeline

Dockstore implementation of CGP core WGS analysis

GitHub for the SIB courses NGS - Genome variant analysis

PlasmidID is a mapping-based, assembly-assisted plasmid identification tool that analyzes and gives graphic solution for plasmid identification.

Optimised pipeline to process whole genome sequence data from fastq to BAM on NCI Gadi

New computational framework to process and analyze KAS-seq and spKAS-seq data.

Reconstruction and analysis of viral and host genomes at multi-organ level

DeepVariant-on-Spark is a germline short variant calling pipeline that runs Google DeepVariant on Apache Spark at scale.

PIpeline for MetaGenomic Analysis of Viral reads from 2nd generation sequencer

less like viewer for fastq files

Repository for bulk RNAseq course of the Danish Health Data Science Sandbox project.

Utilities for analyzing next generation sequencing data.

eXome Hidden Markov model (XHMM) - Copy Number Variants (CNVs) from Whole Exome Sequencing Data

Variant calling pipeline for germline enrichment NGS data

This is the repository of the Genomics Core High Performance Computing for Genomics workshop.