Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")
A Python package for gene network analysis
Repository for the paper: "SPACE: STRING proteins as complementary embeddings"
A Python toolkit for setting up benchmarking dataset using biomedical networks
NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity
A MUlti-species Network Kernel algorithm to embed proteins from a target network into a source network, creating cross-species representations for various comparative and predictive tasks
A Python package for analyzing harmonized biological networks through diffusion algorithms
A Python package for network analysis through diffusion label propagation algorithms
Simulating and analyzing dynamical network models
Semantic Capture of Relationships In Biological Literature (scribl)
Code for my Master project
centrality measures in ecological networks
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