Protein-network proximity analysis for Parkinson's disease candidate prioritization using STRING and GTEx substantia nigra expression.

Semantic Capture of Relationships In Biological Literature (scribl)

A browser-based implementation of Cytoscape for network visualization and analysis. Runs entirely in your browser with data-driven styling, collaborative workflows, and Cytoscape ecosystem integration.

SPACE: STRING proteins as complementary embeddings

Systems biology analysis of breast cancer exosome proteomics to identify candidate biomarker proteins using differential expression and protein interaction networks.

Computational dissection of F. nucleatum-driven Wnt/Hedgehog hyperactivation in Colorectal Cancer, mapping the downstream HBEGF autocrine and GDF15 immune-tolerance networks.

A knowledge graph of the wastewater treatment microbiome and its biological context

A project to evaluate the differences in bacterial association networks from rainforest and converted pasturelands in the Colombian Amazon region using CCLasso and SPRING inference methods

NHC: A computational approach to detect physiological homogeneity in the midst of genetic heterogeneity

Broad-spectrum antiviral target discovery for SARS-CoV-2 and Influenza A.

Project on finding pathway clusters in the Human1 metabolic network

Simulation of interactions miRNA:Competing Targets

A Python toolkit for setting up benchmarking dataset using biomedical networks

A web interface for ontology-based protein network visualization.

NXOntology data: making ontologies accessible as simple JSON files

Performant, pure-Python subgraph isomorphism and monomorphism search (aka "motif search")

Code for my Master project

Source code and data for "Causal reasoning over knowledge graphs leveraging drug-perturbed and disease-specific transcriptomic signatures for drug discovery"

Masters' thesis: Construction & analysis of miRNA-RAB sub-networks in human RAB associated disorders- A network biology approach

Framework for investigation of cell-type-specific regulation and expression in rare disease