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CATE

theLongLab / CATE

Star 15

A fast and scalable CUDA implementation to conduct highly parallelized evolutionary tests and viral simulations at scale. Related manuscripts: https://doi.org/10.1111/2041-210X.14168 and https://doi.org/10.1038/s41467-025-60988-8

genome genetics anaconda cuda conda vcf epidemiology hiv viral-genomics 1000genomes evolutionary-biology neutrality ehh mk-test epidemic-simulations sars-cov-2 extended-haplotype-homozygosity tajima
  • Updated Aug 20, 2025
  • Cuda

thomasWeise / BBDOB_W_Model

Star 4

The W-Model, a tunable Black-Box Discrete Optimization Benchmarking (BB-DOB) problem, implemented for the BB-DOB@GECCO Workshop.

benchmark discrete-mathematics noise local-search experiments epistasis evolutionary-algorithm multi-objective deterministic random-walk fitness-landscape combinatorial-optimization neutrality black-box-benchmarking non-separability multi-objectivity ruggedness benchmark-problem hill-climber
  • Updated Oct 14, 2020
  • Java

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