This is the repository for the BioImage Suite Web Project

FSL-R Interface package

Exploring, organizing, and analysing neuroimages (MR focus)

MATLAB toolbox to automatically detect, analyze and visualize spatiotemporal patterns in neural population activity, developed by Dr. Pulin Gong's group at University of Sydney

Neuroimaging analysis in Python

Peak width of Skeletonized Mean Diffusivity (PSMD)

Perform automatic skull-stripping for neuroimage analysis

Open Source EEG

The QDECR package for vertex-wise analyses in R

Preprocessing toolbox for rat rs-fMRI data

Threshold-free cluster enhancement toolbox for Matlab

Matlab toolbox to deconvolve BOLD-fMRI data. It produces the underlying spatiotemporal neural and hemodynamic activity

Implementation of algorithm in 'Yikang Liu et al. (2020) Automatic Brain Extraction for Rodent MRI Images. Neuroinformatics. doi: 10.1007/s12021-020-09453-z''

Scripts for the Cho et al. (2024) manuscript

A modern web interface for VoxLogicA, the Voxel-based Logical Analyser.

Software for simulating MEG and EEG event-related responses. functional connectivity, and phase-amplitude coupling

Analysis code for connecting time-series properties of BOLD dynamics to connectivity properties using human fMRI and DWI data from HCP

Python implementation of various Brainstorm functions, often written for GPU or jit speed-up.

Pypelines Utilizing a Modular Inventory

Scripts, atlases etc. used for MRI & PET research in the AMYPAD consortium