🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
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Updated
Dec 25, 2025 - R
🌲 An easy-to-use and scalable toolkit for genomic alteration signature (a.k.a. mutational signature) analysis and visualization in R https://shixiangwang.github.io/sigminer/reference/index.html
R package for bayesNMf, a computationally efficient Gibbs sampler for Bayesian Poisson NMF which automatically determines the number of latent factors while quantifying uncertainties of the learned matrices.
An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.
seqArchR: Identifying (promoter) sequence architectures de novo using NMF
archR: Identifying promoter sequence architectures de novo using NMF
Filling missing data for congressional voting dataset from UCI Machine Learning Repository
This project, done for GA Tech, explores relationship between health factors and hospitalization in NHANES dataset
Code for our ICML '18 paper "Closed-form Marginal Likelihood in Gamma-Poisson Matrix Factorization"
An R code for classifying GCxGC data based on a NMF algorithm
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