CLI tool for flexible and fast adaptive sampling on ONT sequencers
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Apr 28, 2025 - Python
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ont
Here are 20 public repositories matching this topic...
ClairS - a deep-learning method for long-read somatic small variant calling
bioinformatics deep-learning nanopore genomics somatic-variants haplotypes pacbio somatic-mutations illumina indels phasing snvs long-reads ont long-read-sequencing short-reads
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Nov 28, 2025 - Python
ClairS-TO - a deep-learning method for tumor-only somatic variant calling
bioinformatics deep-learning nanopore genomics somatic-variants variants pacbio variant-calling somatic-mutations illumina snvs long-reads ont long-read-sequencing tumors tumor-only
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Nov 13, 2025 - Python
Mapping-based Genome Size Estimation (MGSE) performs an estimation of a genome size based on a read mapping to an existing genome sequence assembly.
genomics genome ngs plants pacbio illumina genome-assembly read-mapping ont nanopore-sequencing genome-size-estimation
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Jul 11, 2025 - Python
Clair3-RNA - a long-read small variant caller for RNA sequencing data
rna-seq deep-learning nanopore rna variant-calling rna-editing rna-seq-pipeline ont long-read-sequencing pacbio-iso-seq
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Nov 23, 2025 - Python
Basecalling configuration prediction through FASTQ files
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Nov 24, 2025 - Python
Wrapper to read fast5, slow5, blow5 and pod5 files.
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Mar 26, 2025 - Python
FLAME: Full Length Adjecency Matrix Enumeration - is a module that allows for the analysis of ONT Nanopore RNA long-read sequencing data.
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May 8, 2025 - Python
Get L. pneumophila ST from long-read or hybrid assemblies.
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Dec 11, 2025 - Python
CatMOD is a CatBoost-based feature-concatenation model for RNA modification recognition from ONT DRS.
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May 23, 2022 - Python
Wrapper to read fast5 and pod5 files.
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Apr 5, 2025 - Python
Build highly accurate transcripts from long-read RNA data
bioinformatics rna-seq bioinformatics-pipeline tgs rnaseq rna-seq-data pacbioreadsconnection sequencing-rna rna-seq-pipeline ont bioinformatics-tool pacbio-iso-seq
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Jul 30, 2020 - Python
Generates simulated ONT metegenomic samples based off existing microbiome sample abundances
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Dec 19, 2024 - Python
Este proyecto implementa una solución automatizada para la gestión de ONTs (Optical Network Terminals) en una OLT GPON C-Data
python ssh automation mongodb crontab maintenance networks management-system telecommunications olt gpon optical-network ont remote-management c-data
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Mar 28, 2025 - Python
Paquete en Python que proporciona una interfaz basada en clases para conectar vía Telnet a un OLT Zyxel (modelo OLT1408A) y extraer información de las ONT (Optical Network Terminations) en estructuras de datos listas para serializar a JSON. Todo se realiza sin SNMP, únicamente mediante comandos Telnet y parseo de las salidas ASC
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Jun 16, 2025 - Python
Adaptive sampling BED helper tool for Oxford Nanopore sequencing. built on pybedtools (0.12.0) with chrom sizes from bioframe
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Sep 18, 2025 - Python
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