BRIDGE is a web-based application designed to operationalize ARC and edit any ISARIC CRF and tailor it to outbreaks particular context.
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Mar 23, 2026 - Python
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outbreaks
Here are 23 public repositories matching this topic...
ISARIC ARC is a comprehensive machine-readable document that contains a library of questions to be used in Clinical Report Forms (CRFs) during disease outbreaks.
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Mar 23, 2026 - Python
During outbreaks of emerging diseases such as COVID-19, efficiently collecting, sharing, and integrating data is critical to scientific research. outbreak.info is a resource to aggregate all this information into a single location.
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Mar 20, 2026 - Vue
ISARIC VERTEX is a web-based application designed to present graphs and tables based on relevant research questions that need to be quickly answered during an outbreak. It serves as an analysis tool for data captured through our complementary tools: ISARIC ARC and ISARIC BRIDGE.
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Mar 23, 2026 - Python
Report templates and helper functions for applied epidemiology
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Feb 25, 2026 - R
Office for Linelist Management
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Feb 24, 2026 - Python
Course on nowcasting and forecasting of infectious disease dynamics
learning forecasting epidemics delay-estimation nowcasting outbreaks outbreak-analysis infectious-disease-dynamics
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Mar 2, 2026 - R
Understanding, evaluating, and improving forecasts of infectious disease burden
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Mar 2, 2026 - TeX
Tools And ggplot Extensions For Infectious Disease Surveillance And Outbreak Investigation
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Nov 27, 2025 - R
Docker-based COHESIVE Information System (CIS) for One Health surveillance, outbreak investigation, and risk assessment of zoonoses.
bioinformatics public-health clustering-analysis outbreaks one-health outbreak-investigation foodborne-diseases diseases-surveillance
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Oct 14, 2025 - Groovy
R package for handling linelist data
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Jan 1, 2026 - R
O ÆSOP (Alert-Early System of Outbreaks with Pandemic Potential) é um sistema que integra múltiplas fontes de dados para ajudar autoridades de saúde a identificar antecipadamente possíveis surtos, permitindo ações preventivas antes que a transmissão se intensifique.
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Apr 8, 2025
In this training course you will find theory and practice material for introducing yourself to wgs analysis for bacterial, including outbreak investigation.
genome nextflow sequencing wgs ngs-analysis outbreak-detection bacterial-genomes outbreaks bacterial-wgs-training wgs-analysis
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Oct 31, 2024 - HTML
R package for estimation and monitoring of the effective reproduction number in a pathogen outbreak/epidemic
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Sep 10, 2024 - R
This geospatial project maps Marburg virus transmission, a zoonotic disease with high case fatality rates in Africa. It highlights the need for medical treatment, isolation, and quarantine measures. Vaccines and contact tracing can limit the global spread of epidemics
virus public-health global-health africa zoonotic-disease isolation vaccine epidemic marburg quarantine outbreak outbreaks infectious-disease contact-tracing case-fatality-rate vaccine-development marburg-virus hemorrhagic-fever virus-transmission
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Apr 16, 2023 - Python
Bayesian SEIR model fitting to multiple facility outbreaks
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Aug 17, 2022 - R
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