R package that implements Likelihood ratio test for pleiotropy v close linkage

R interface to SOLAR

QTL mapping with binmap data

GUI for binQTL

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

Mirror of amplicon-qtl repository.

Mixed models @lme4 + custom covariances + parameter constraints

QTL Bayesian Interval Mapping

We are investigating the genetic architecture of decayed sexual traits in asexual females of the parasitoid wasp Asobara japonia. In particular, we conduct QTL analysis for the female functional virginity trait, which referes to asexual females resisting to mate or not fertilizing eggs after mating. In the case of A. japonica, asexual females re…

Data, script, and outputs for the guppy courtship behavior chapter of Nathan Phipps' M.S. thesis project (An extension of Laura Stein's guppy intercross project.) Study conducted at Colorado State University with funding from the National Science Foundation.

This is a fork from qqman package

R package for random-effect multiple QTL mapping in autopolyploids

Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine

Create LocusZoom-style plots in R.

Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest

Scripts of Final Master Project

Kernelized HAplotype-based MIXed model association mapping (KHAMIX)

Association testing for genetically regulated co-expression.