Code used for the manuscript 'Network reconstruction for trans acting genetic loci using multi-omics data and prior information' by Hawe et al., 2022 in Genome Medicine

Data, script, and outputs for the guppy courtship behavior chapter of Nathan Phipps' M.S. thesis project (An extension of Laura Stein's guppy intercross project.) Study conducted at Colorado State University with funding from the National Science Foundation.

Mirror of amplicon-qtl repository.

R package that implements Likelihood ratio test for pleiotropy v close linkage

In-silico methods for finemapping of genetic regions in inbred mice

echoverse module: Example data.

This is a fork from qqman package

Scripts of Final Master Project

We are investigating the genetic architecture of decayed sexual traits in asexual females of the parasitoid wasp Asobara japonia. In particular, we conduct QTL analysis for the female functional virginity trait, which referes to asexual females resisting to mate or not fertilizing eggs after mating. In the case of A. japonica, asexual females re…

Code to analyze the genetics of aging and lifespan of UM-HET3 mice

Fine mapping analysis within the pQTL pipeline project

echoverse module: Statistical and functional fine-mapping functions.

Kernelized HAplotype-based MIXed model association mapping (KHAMIX)

GUI for binQTL

QTL Bayesian Interval Mapping

Pipeline to compute associations between genome-wide trans QTL scores and phenotype of interest

R interface to SOLAR

echoverse module: Locus plot creation for fine-mapping and colocalization studies.