In-silico methods for finemapping of genetic regions in inbred mice

Automated statistical and functional fine-mapping pipeline with extensive API access to datasets.

R package for organizing genomic analysis projects. QTL/GWAS follow-up, gene sheets, locus zoom plots

echoverse module: Example data.

Easy-to-use R wrappers for the eQTL Catalogue's API (both with tabix and the REST API).

echoverse module: Locus plot creation for fine-mapping and colocalization studies.

echoverse module: Statistical and functional fine-mapping functions.

A comprehensive QTL analysis tool by multivariate linear mixed model.

Regional association plot of the signals in the pQTL project

Fine mapping analysis within the pQTL pipeline project

Statistical genetics workflow for QTL colocalization with GWAS summary statistics.

Quantum Transfer Learning (QTL) for Lottery Prediction

Rapid standardisation and quality control of GWAS or QTL summary statistics

Code to analyze the genetics of aging and lifespan of UM-HET3 mice

Pangenome-based zygosity matrices.

🧬High-performance genetics- and genomics-related data visualization using Makie.jl

Research Bot is an assistant for genetics/QTL analysis that combines fast SQL analytics in DuckDB with an optional ChromaDB vector store for semantic search. It can optionally integrate GWAS and Ensembl data (and local GTEx/Tabula Muris files) to enrich cross-species gene and trait exploration.

Scripts for various molecular quantitative trait locus (xQTL) analysis.

Association testing for genetically regulated co-expression.

A molecular Mendelian Randomization tool