papaja (Preparing APA Journal Articles) is an R package that provides document formats to produce complete APA manuscripts from RMarkdown-files (PDF and Word documents) and helper functions that facilitate reporting statistics, tables, and plots.

rrtools: Tools for Writing Reproducible Research in R

Project Example for the Lesson: Introduction to Reproducible Publications with Quarto

The Turing Change Point Detection Benchmark: An Extensive Benchmark Evaluation of Change Point Detection Algorithms on real-world data

Cross-disease comparison of case-control gut microbiome studies

Introduction to Reproducible Publications with Quarto

An archive for NILM papers with source code and other supplemental material

Ten Simple Rules for Writing Dockerfiles for Reproducible Data Science

Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data

Code for "Depth Uncertainty in Neural Networks" (https://arxiv.org/abs/2006.08437)

A model executable manuscript

Microbiota-based model improves the sensitivity for detecting colonic lesions

Investigating the gut virus communities associated with colon cancer.

Course Materials for Code Horizons Course on Creating Reproducible Reports with Quarto and R Markdown

Ready to use R Markdown notebook for the paper "Reproducible research and GIScience: an evaluation using AGILE conference papers"

Repository for reproducibility of the CSV file project

Analysis for "Population structure and phenotypic variation of *Sclerotinia sclerotiorum* from dry bean (*Phaseolus vulgaris*) in the United States"

Code for "Variational Depth Search in ResNets" (https://arxiv.org/abs/2002.02797)