rrtools: Tools for Writing Reproducible Research in R

Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data

Microbiota-based model improves the sensitivity for detecting colonic lesions

Text, data and code to accompany the analysis of the 1989 excavation data

Reproducible workflow for Schubert et al. 2015 mBio

R Package - A graphical user interface for some of the main functions of Ben Marwick's rrtools package

Repository associated with Jenior ML, et al. (2018). mSphere.

Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)

Code for "Disentangling heterogeneity of psychosis expression in the general population: sex-specific moderation effects of environmental risk factors on symptom networks", Psychological Medicine, 2021.

Repo associated with Jenior et. al. (2017). Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes. mSystems.

LaTeX template files described in the article "LaTeX tutorial for the standardization and automation of population analysis reports"

Analysis scripts of the paper "Seasonal drought prediction for semiarid northeast Brazil: what is the added value of a process-based hydrological model?", published in HESS

Repository to accompany "Manipulation of the Gut Microbiome Reveals Role for Microbial Community Structure in Colon Tumorigenesis"

Constructing a synthetic counterfactual to analyze impact of carbon taxes