Reproducible workflow for Schubert et al. 2015 mBio

Microbiota-based model improves the sensitivity for detecting colonic lesions

Repository to accompany "Manipulation of the Gut Microbiome Reveals Role for Microbial Community Structure in Colon Tumorigenesis"

Analyzing snake movement data using Stan models (from R)

Text, data and code to accompany the analysis of the 1989 excavation data

Repo associated with Jenior et. al. (2017). Clostridium difficile Colonizes Alternative Nutrient Niches during Infection across Distinct Murine Gut Microbiomes. mSystems.

Code, data, and figures for an experimental pathogen exposure study using wood frogs and American bullfrogs

Literate programming using m4 pandoc R and make

Repository associated with Jenior ML, et al. (2018). mSphere.

Analysis scripts of the paper "Seasonal drought prediction for semiarid northeast Brazil: what is the added value of a process-based hydrological model?", published in HESS

R code and data to reproduce analyses of the paper by Charles-Edwards & Panczak (2018). Part of the TEMPO project.

El Efecto de la Legalización de la Marihuana sobre la Criminalidad en los Estados Unidos

Code and data to accompany the chromswitch paper, "chromswitch: A flexible method for detecting chromatin state switches" (Jessa and Kleinman, Bioinformatics, 2018)

Best practices for applying machine learning to bacterial 16S rRNA gene sequencing data

Key results reported by PRAM's manuscript and scripts for reproducibility