salmon

🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment

SalmonTE is an ultra-Fast and Scalable Quantification Pipeline of Transpose Element (TE) Abundances

Differential expression and allelic analysis, nonparametric statistics

A Ruby toolset for interacting with the OStatus suite of protocols

PISCES is a pipeline for rapid transcript quantitation, genetic fingerprinting, and quality control assessment of RNAseq libraries using Salmon.

RNAseq pipeline centered on Salmon

Nextflow Alignment Pipeline - from fastq.gz to sorted bam/cram with ease

OStatus Specification

RNA-seq Analysis Pipeline Testing and Optimization Resource - Intelligent pipeline selection and comprehensive benchmarking.

TUCCA's RNA-Seq Workflow for Read Quantification, Differential Expression, and Pathway Enrichment Analysis

A salmon plugin for WordPress

A JavaScript interpreter for Homespring

CoExp website is a web-based tool developed in .NET Core Framework, for querying 109 independent gene co-expression networks from the family of CoExp R packages.

rCAX R package: an R client to access the REST API for the StreamNet Coordinated Assessments tables

Code for smooth interactions with the salvage database

Evaluating HISAT2, Salmon and Kallisto alignment using Checkpoint Blockade treated CT26 Experimental Data

Mise à jour et standardisation des séries chronologiques d'abondance du saumon atlantique sur les cours d'eau de l'ORE DiaPFC

Performed a differential gene expression analysis with RNA-seq that compares the expression in human control breast cancer cell lines with lines treated by silencing the NRDE2 gene. A Salmon + tximport + DESeq2 workflow was conducted to pursue this.

연어봇 - SalmonBot

Spawner and fraction wild data for the NWFSC Status Reviews.