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scrna-seq

Here are 4 public repositories matching this topic...

victorkleb / scRNA-seq_Pr

Functions that implement the algorithms described in the preprint "Normalization and gene selection for single-cell RNA-seq UMI data using sampling-adjusted sums of squares of Pearson residuals with a Poisson model" and Jupyter notebooks that reproduce the results in the preprint and its Supplement 1

gene-expression feature-selection scrna-seq normalization variable-genes pearson-residuals

Updated Dec 21, 2023
Jupyter Notebook

aristoteleo / dynamo-notebooks

Tutorials of Dynamo usage cases and code to reproduce the manuscript

velocity protein dynamo scrna-seq rna notebooks vector-field scslam-seq potential-landscape

Updated Apr 6, 2022
Jupyter Notebook

TomMakesThings / Clustering-and-TDA-of-scRNA-seq-Data

Final year project experimenting with clustering and topological data analysis of scRNA-seq data using Python and R across two Jupyter notebooks

python machine-learning bioinformatics clustering mapper jupyter-notebook computational-biology pca autoencoder scrna-seq k-means principal-component-analysis topological-data-analysis hierarchical-clustering tda single-cell-rna-seq splatter kepler-mapper

Updated Aug 8, 2021
Jupyter Notebook

ismms-himc / clustergrammer2-notebooks

Examples using Clustergrammer2 to explore high-dimensional datasets.

bioinformatics binder jupyter notebook scrna-seq binder-ready

Updated Aug 24, 2020
Jupyter Notebook

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