scrna-seq

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This is a set of bash wrapper scripts for STAR that simplify it's setup and use with a set of pre-defined parameters.

linux bash bioinformatics scrna-seq zebrafish danio-rerio

ThunderBio scRNA-seq pipeline

Small repo for running Allen Institute's Cell_Type_Mapper (MapMyCells) on Seurat scRNAseq objects.

ChiP-seq and DNase-seq ,Bulk RNA-seq,scRNA-seq processing pipeline via R and shell

rna-seq scrna-seq chip-seq

10x Cell Ranger Docker Image

docker genomics scrna-seq umi single-cell scrna cellranger

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