This repo contains the analytical code to analyze two scRNA-seq data to better understand the cochlear duct extension during development

Single-Cell Data Science

scRNA-seq datasets to support Jung et al, Sci Adv, 7(6): eabe5735, 2021. DOI: 10.1126/sciadv.abe5735

I've written a few functions that help me look through scRNA-seq data while working with Seurat.

Collection of customised plotting functions.

Code for exploration of non-coding elements in single-cell RNA seq data

scRNA-seq for COVID-19 samples, with healthy controls.

BCF's single-cell GEX analysis workflows and Shiny App source code

Small repo for running Allen Institute's Cell_Type_Mapper (MapMyCells) on Seurat scRNAseq objects.

scRNA-seq to analyze cells during human pluripotent stem cell differentiation into islets at D11, D14, D21, D32, D39.

Let's try to replicate bioinformatics performed in a scRNA-seq related paper!

In this module, you will take a deeper look at RNA-sequencing using single-cell approaches and miRNA sequencing, and investigate their impacts on gene regulation

An analysis of innate lymphoid cell (ILC) populations in healthy and disregulated (IBD) gut-associated samples.

Tobias Beers, Perry Moerland: MSc Computational Science project on (hierarchical) PPCA-techniques for scRNA-seq data.

Single cell app-Islets

Profiling Integrative Communities of Aggregated Single-cell Omics data

This study is using scRNA-seq to study the expression and regulation of alternative splicing (AS) events in single cells

This repository contains text files with information and links corresponding to QR codes featured in my poster. Each QR code directs viewers to detailed content, references, or supplementary materials related to the topics covered in the poster.

single-cell-RNA-Seq-Data-Analysis-Methods