snakemake

RNA-Seq analysis for "Mitochondrial DNA Variation Dictates Expressivity and Progression of Nuclear DNA Mutations Causing Cardiomyopathy"

📋 Template for the Snakemake workflow management system

A Snakemake pipeline for Illumina Transcriptome Assembly: trimmomatic + dignorm+ trinity

🐍 Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).

Pooling Illumina NextSeq 500 fastq files

Homepage for the snakemake days in Amsterdam 2017

Bioinformatics workflows with Snakemake

Short pipeline for processing of Envision plate files

cookiecutter boilerplate for smsk

Two hour Snakemake lesson for Boise Joint User Groups Meeting

Rules to run Roary or PanPhlAn to build pangenome using Snakemake

Tutorial test

Singularity recipe that includes git-annex, RStan, Python 3, and Snakemake

Exome/Capture/RNASeq Pipeline Implementation using snakemake

a beamer theme LagonBleu, with slides built from markdown

Data analysis related to the bioconda paper

Bioinformatics pipelines

a template for presentations with xaringan built with snakemake (without loading via Rstudio)

Snakemake pipeline for Ribo-Seq analysis