Structural variation and indel detection by local assembly

Structural variation caller using third generation sequencing

Pangenome-based structural variation caller

A snakemake pipeline to call structure variants from ONT data

Application of pan-genome for population

Structural variant and indel caller for mapped sequencing data

NGMLR is a long-read mapper designed to align PacBio or Oxford Nanopore (standard and ultra-long) to a reference genome with a focus on reads that span structural variations

Toolset for SV simulation, comparison and filtering

MAMnet uses a deep learning network to call genetic variants from third generation DNA sequencing data.

Micro DNA identification

Pipeline for SV detection using 10X genomics data

novoBreak: local assembly for breakpoint detection in cancer genomes

PhD thesis

A framework to annotate SVs with previous known SVs (vcf file) and or with genomic features (gff and or bed files)