Tags: treangenlab/somatem
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Trying to resume named run in somatem executable (bioconda), but fail… …s due to argument position/positionality issue. Archived for later
Austin's attempt to include seqscreen code into bin/ and subworkflows… …/ and domesticate it for somatem. Too challenging, better to do upstream in seqscreen repo for longevity. ARCHIVED for now
skipping CLI log due to colouring loss in terminal. Can add a paramet… …er with conditional in bin/somatem to enable this in the future if users desire?. ARCHIVED for now
Austin's marlin python script that strings together other tools to ac… …hieve faster reference based assembly. Revisit after publication if Austin develops this independently. ARCHIVED
storing branch with a failed attempt at a conditional branch in workf… …lows/somatem.nf with an early return - which is impossible due to emit's not reached. AI misguided tangent
gcloud executor needs a bucket to run. abandoning for now. lot of doc… …umentation and links in ..quicknotes.md
the changes in this branch show the parameters in nextflow.config tha… …t were somewhat _important_ before adding a comprehensive list of all parameters
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