Lists (6)
awesome-3d/2d-viewers
awesome list of 2d and 3d protein structures viewer tools, scriptsAwesome-Protein-Design
A curated collection of state-of-the-art resources for computational protein design, including Generative AI, Deep Learning, and physics-based tools.awesome-TCR
A curated collection of state-of-the-art T-cell receptor (TCR) tools and models published exclusively in Nature, Science, Cell and PreprintsLinux-stuff
list of some linux toolsOPENMM/ML-Forcefields
ML-Frocefieldssmall-molecule-generative-AI
collection of generative models for small molecules, covering Diffusion Models, Geometric Deep Learning, and Flow-based methods for de novo small mol designStars
An opinionated list of Python frameworks, libraries, tools, and resources.
Python tool for converting files and office documents to Markdown.
🌐 Make websites accessible for AI agents. Automate tasks online with ease.
Unified web UI for training and running open models like Qwen, DeepSeek, gpt-oss and Gemma locally.
AI agents running research on single-GPU nanochat training automatically
A set of ready to use Agent Skills for research, science, engineering, analysis, finance and writing.
High accuracy RAG for answering questions from scientific documents with citations
Official repository for the Boltz biomolecular interaction models
Biomni: a general-purpose biomedical AI agent
Message Passing Neural Networks for Molecule Property Prediction
Automatic Video Generation from Scientific Papers
Zotero MCP: Connects your Zotero research library with Claude and other AI assistants via the Model Context Protocol to discuss papers, get summaries, analyze citations, and more.
A deep learning package for many-body potential energy representation and molecular dynamics
Toward High-Accuracy Open-Source Biomolecular Structure Prediction.
Official implementation of MatterGen -- a generative model for inorganic materials design across the periodic table that can be fine-tuned to steer the generation towards a wide range of property c…
A Python package that makes it easy for developers to create AI apps powered by various AI providers.
A flexible framework powered by ComfyUI for generating personalized Nobel Prize images.
The easiest way to get started with LlamaIndex
Examples of programs built using Modal
User friendly and accurate binder design pipeline
A comprehensive library for computational molecular biology
Making Protein Design accessible to all via Google Colab!
Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning
Central repository for biomolecular foundation models with shared trainers and pipeline components