Lists (6)
awesome-3d/2d-viewers
awesome list of 2d and 3d protein structures viewer tools, scriptsAwesome-Protein-Design
A curated collection of state-of-the-art resources for computational protein design, including Generative AI, Deep Learning, and physics-based tools.awesome-TCR
A curated collection of state-of-the-art T-cell receptor (TCR) tools and models published exclusively in Nature, Science, Cell and PreprintsLinux-stuff
list of some linux toolsOPENMM/ML-Forcefields
ML-Frocefieldssmall-molecule-generative-AI
collection of generative models for small molecules, covering Diffusion Models, Geometric Deep Learning, and Flow-based methods for de novo small mol designStars
A diffusion-based ML model for de novo design of DNA, RNA, proteins, and mixed assemblies.
ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
Collection of leaked system prompts
A flow matching model for generating conformational ensembles of protein backbones.
Official repository of "ODesign: A World Model for Biomolecular Interaction Design"
Repository to compute the IPSAE score used in the Nipah Virus Competition
Some scripts that I keep using over and over.
OVO, an open-source ecosystem for de novo protein design
Python tool for converting files and office documents to Markdown.
Automatic Video Generation from Scientific Papers
Unified all-atom structure-conditioned molecule generation
HalluDesign, a hallucination-driven all-atom framework for the iterative co-optimization and co-design of protein sequences and structures by leveraging the forward pass of a structure prediction m…
Awesome-Biomolecule-Language-Cross-Modeling: a curated list of resources for paper "Leveraging Biomolecule and Natural Language through Multi-Modal Learning: A Survey"
A collection of awesome bio-foundation models, including protein, RNA, DNA, gene, single-cell, and so on.
original rifdock before refactoring by Brian. No tasks ...... or other fancy coding stuff
The original rifdock, which contains lots of bugs ...... but that's the prototype of rifdock.
DeepRMSD+Vina is a computational framework that integrates ligand binding pose optimization and screening.
A simple but powerful VSCode extension for visualizing protein structures using the Molstar framework.
An Integrated VMD Graphical User Interface for Molecular Packing