Lists (6)
awesome-3d/2d-viewers
awesome list of 2d and 3d protein structures viewer tools, scriptsAwesome-Protein-Design
A curated collection of state-of-the-art resources for computational protein design, including Generative AI, Deep Learning, and physics-based tools.awesome-TCR
A curated collection of state-of-the-art T-cell receptor (TCR) tools and models published exclusively in Nature, Science, Cell and PreprintsLinux-stuff
list of some linux toolsOPENMM/ML-Forcefields
ML-Frocefieldssmall-molecule-generative-AI
collection of generative models for small molecules, covering Diffusion Models, Geometric Deep Learning, and Flow-based methods for de novo small mol designStars
de novo design of high affinity biological binders
Multi platform molecular dynamics simulator for coarse-grained MD simulation on GPU.
Code and scripts for the de novo design of near infrared fluorescent proteins
EvolveX, a de novo antibody computational design pipeline.
Scripts and designs models for ligand induced oligomers
MCP Toolbox for Databases is an open source MCP server for databases.
Actual, complete solution for Linux audio on the Lenovo Legion Pro 7i Gen 10 (16IAX10H)
Lightweight Lenovo Vantage and Hotkeys replacement for Lenovo Legion laptops.
Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies
A high-performance, GPU-accelerated library for key computational chemistry tasks, such as molecular similarity, conformer generation, and geometry relaxation.
A diffusion-based ML model for de novo design of DNA, RNA, proteins, and mixed assemblies.
ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
Collection of leaked system prompts
A flow matching model for generating conformational ensembles of protein backbones.
Official repository of "ODesign: A World Model for Biomolecular Interaction Design"
Repository to compute the IPSAE score used in the Nipah Virus Competition