Powerful system-level package manager for Linux, macOS and Windows written in Rust – building on top of the Conda ecosystem.

Open Source Continuous File Synchronization

matplotlib: plotting with Python

Let's Encrypt/ACME client and library written in Go

Configure Syncthing from the terminal

A fast PostgreSQL Database Client Library for Python/asyncio.

A blazing fast npm compatible package installer in Rust. Reads package.json; installs packages.

Knead your sequencing reads before baking: clips, demultiplexes, filters and trims reads

Makes aiohttp server autoreload on source code change

JSON-based FON (Feature Object Notation) format and tools to simplify genomic annotations usage

Optional tools to help manage data in a mergerfs pool

Genomics pipelines

Failing Disk Reporter (FDR): Get a report when a drive (HDD or SDD) is failing via Matrix or Slack. MIRROR

Versatile databases for genomic sequencing and lab management

Small utility functions for Python: logging, parallel tasks, zstd

Counts and profiles sequencing reads within genes, chromosomes or constructs.

This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.

A simple, flexible script for versioned backups using btrfs and rsync