Java 1-21 Parser and Abstract Syntax Tree for Java with advanced analysis functionalities.

PowerMock is a Java framework that allows you to unit test code normally regarded as untestable.

functional, durable data structures

The Capsule Hash Trie Collections Library

Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment. Bio-Formats is released under the GNU General Pub…

The PSL software from the University of Maryland and the University of California Santa Cruz

AQUAS TF and histone ChIP-seq pipeline

Toolset to capture, simulate, synthesize and verify graph models

Basic and Advanced OBO Graphs: specification and reference implementation

A Feature Density Estimator for High-Throughput Sequence Tags

LA-PDFText is a system for extracting accurate text from PDF-based research articles (and an interface to be able to improve performance where needed). The system is open-source and provides a simp…

ChExMix: the ChIP-exo mixture model

A library for manipulating bioinformatics sequencing formats in Apache Spark.