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@wtsi-npg

Wellcome Sanger Institute - NPG

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  1. illumina2bam illumina2bam Public

    Generate and process BAM files from Illumina sequencing instrument files

    Java 23 15

  2. baton baton Public

    iRODS client programs and API

    C 20 19

  3. npg_seq_pipeline npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    Perl 11 17

  4. bambi bambi Public

    Process Illumina instrument data into SAM/BAM/CRAM files.

    C 10 14

  5. Percolate Percolate Public archive

    A parallel workflow management application.

    Ruby 6 3

  6. genotyping genotyping Public

    Components of the WTSI genotype analysis pipeline.

    Perl 6 6

Repositories

Showing 10 of 90 repositories
  • npgqc-python Public

    ORM for npg-qc

    wtsi-npg/npgqc-python's past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated Nov 12, 2026
  • npg-irods-python Public

    Applications for the management of data and metadata in iRODS

    wtsi-npg/npg-irods-python's past year of commit activity
    Python 3 GPL-3.0 10 4 1 Updated Nov 12, 2026
  • npg_tracking Public

    WTSI Illumina sequencing instruments (HiSeq, MiSeq, GA) tracking

    wtsi-npg/npg_tracking's past year of commit activity
    Perl 4 20 12 4 Updated Nov 12, 2026
  • npg_qc Public

    QC checks and metrics for Illumina NGS data

    wtsi-npg/npg_qc's past year of commit activity
    Perl 6 18 20 1 Updated Nov 12, 2026
  • npg_seq_pipeline Public

    Processing and analysis of data coming from Illumina sequencing machines

    wtsi-npg/npg_seq_pipeline's past year of commit activity
    Perl 11 17 23 8 Updated Nov 12, 2026
  • npg-polite Public

    A minimal, task-centric API for interacting with a Porch server

    wtsi-npg/npg-polite's past year of commit activity
    Python 0 GPL-3.0 2 0 1 Updated Nov 12, 2026
  • npg_notifications Public
    wtsi-npg/npg_notifications's past year of commit activity
    Python 0 6 2 4 Updated Nov 12, 2026
  • sqyrrl Public

    Sqyrrl - an HTTP server for files hosted in iRODS

    wtsi-npg/sqyrrl's past year of commit activity
    Go 1 GPL-3.0 4 2 2 Updated Nov 10, 2026
  • partisan Public

    A Python client API for iRODS

    wtsi-npg/partisan's past year of commit activity
    Python 3 GPL-3.0 6 0 1 Updated Nov 9, 2026
  • npg-python-lib Public

    A library of Python functions and classes common to NPG applications

    wtsi-npg/npg-python-lib's past year of commit activity
    Python 0 GPL-3.0 2 0 1 Updated Nov 9, 2026
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