Efficient retrieval, download, and unification of genomic data from leading biodiversity databases

A tool for timing complex copy number gains in cancer.

A powerful TWAS framework leveraging summary-level reference data

A list of interesting genome browser and genome visualization programs

Any Way to Show Multi genomic Synteny

An R package to plot maps of clone distributions in somatic evolution

An R package to plot maps of clone distributions in somatic evolution

Estimate locus specific human LINE-1 expression.

Various algorithms for analysing genomics data

knowledge-based genotyping of cancer hotspots from the tumor BAM files

Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from cancer and other eukaryotic cells.

😎 A curated list of software and resources for exploring and visualizing (browsing) expression data 😎

Cancer Data Science's go to place for excellent genomics tools and packages

The Microbiome Explorer provides methods to analyze and visualize microbial community sequencing data either from the R command line or through a Shiny application. Written by Janina Reeder and Jos…

🦠 A comprehensive R package for deep mining microbiome

Presentation-Ready Data Summary and Analytic Result Tables

ggplot2 shortcuts (transformations made easy)

A tool set to assess the quality of the per read phasing and reduce the errors.

An R package to estimate the quality of imputation of genotypes.

Very large scale k-mer counting and analysis on Apache Spark.

genetic variant expressions, annotation, and filtering for great good.

Integrative mutational signature portal (MsigPortal) for cancer genomic study

🛠️ 📊 Tools for Exploring and Comparing Data Frames

程序猿成长计划

NOTE: The iroki command line tool is no longer maintained. Please see: https://github.com/mooreryan/iroki

Interactive Heat Maps for R Using plotly

CLI HTTP client, user-friendly curl replacement with intuitive UI, JSON support, syntax highlighting, wget-like downloads, extensions, etc.

Robust Allele Specific Quantification and quality controL