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Data management of large-scale whole-genome sequence variant calls using GDS files (Development version only)

C++ 46 12 Updated Apr 1, 2026

Minimal tutorial on making a simple website with GitHub Pages

Ruby 206 410 Updated Mar 31, 2026

Efficiently computes derivatives of NumPy code.

Python 7,473 940 Updated Mar 31, 2026

Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)

Python 250 76 Updated Mar 24, 2026

Revisions to the STAAR Framework

R 1 Updated Mar 23, 2026

Karl Broman's website

HTML 58 105 Updated Mar 7, 2026

Inference on simultaneous confidence bands for survival curves.

R 1 Updated Mar 5, 2026
R 2 Updated Jan 18, 2026

MrBayes is a program for Bayesian inference and model choice across a wide range of phylogenetic and evolutionary models. For documentation and downloading the program, please see the home page:

C 260 86 Updated Jan 9, 2026

R Interface to CoreArray Genomic Data Structure (GDS) Files (Development version only)

C 20 4 Updated Dec 17, 2025

A Repository for Single- and Multi-modal Speaker Verification, Speaker Recognition and Speaker Diarization

Python 2,865 258 Updated Dec 8, 2025

R package to reconstruct individual-level data from KM plots published in academic journals

R 6 2 Updated Dec 3, 2025

Generalized linear Mixed Model Association Tests

C 45 24 Updated Nov 21, 2025

R implementation of Correlated Meta-Analysis (CMA) by the Province Lab is available on CRAN

R 2 1 Updated Oct 24, 2025
R 1 Updated Oct 19, 2025

[GitHub-only] R package that downloads and setups a compiled code environment for macOS

R 66 4 Updated Oct 11, 2025

Description of VCF to aGDS conversion and annotation on the UK Biobank RAP

Shell 11 2 Updated Sep 29, 2025

Acceptance rates for the major AI conferences

Jupyter Notebook 4,738 315 Updated Sep 23, 2025

Contains code to conduct analyses presented in the IGES 2025 Educational Workshop: Practical Tutorial – A Walkthrough of Cross-Biobank Analysis.

HTML 15 2 Updated Aug 29, 2025

Reinforcement Learning Short Course

Jupyter Notebook 91 20 Updated Aug 22, 2025

A fast CSV command line toolkit written in Rust.

Rust 10,758 330 Updated Apr 24, 2025

R Package for "Matching on generalized propensity scores with continuous exposures". An innovative approach for estimating causal effects using observational data in settings with continuous exposu…

R 34 19 Updated Feb 21, 2025

An R package for performing STAAR procedure in whole-genome sequencing studies

C++ 98 48 Updated Feb 9, 2025

VCF Trimmer (UK Biobank RAP)

Shell 3 1 Updated Jan 29, 2025
R 2 2 Updated Jan 13, 2025

COVID-19 Italia - Monitoraggio situazione

3,807 2,186 Updated Jan 10, 2025

VCF Merger for UK Biobank RAP

Shell 1 1 Updated Jan 9, 2025

A flexible tool for meta-analysis

C++ 10 9 Updated Jul 31, 2024
C++ 6 6 Updated Jul 26, 2024
Python 8 1 Updated Jul 25, 2024
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