MMseqs2: ultra fast and sensitive search and clustering suite

A versatile pairwise aligner for genomic and spliced nucleotide sequences

A more intuitive version of du in rust

Python helpers to limit the number of threads used in native libraries that handle their own internal threadpool (BLAS and OpenMP implementations)

A rich help formatter for argparse

Logan Unitigs and Contigs

upload big files to Zenodo using cURL, jq and bash

markov clustering in python

Long-read mock community experiments

Accelerated BLAST compatible local sequence aligner.

Hierarchical Dirichlet processes. Topic models where the data determine the number of topics. This implements Gibbs sampling.

Programming with R for Reproducible Research