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Repo for counting stars and contributing. Press F to pay respect to glorious developers.

275,878 20,908 Updated Aug 22, 2025

A curated list of awesome Machine Learning frameworks, libraries and software.

Python 72,176 15,402 Updated Apr 12, 2026

Collaborative cheatsheets for console commands 📚.

Markdown 62,108 5,193 Updated Apr 14, 2026

Github Pages template based upon HTML and Markdown for personal, portfolio-based websites.

SCSS 16,799 6,432 Updated Apr 8, 2026

Open source code for AlphaFold 2.

Python 14,486 2,604 Updated Apr 7, 2026

📐 Jekyll theme for building a personal site, blog, project documentation, or portfolio.

HTML 13,464 27,314 Updated Mar 11, 2026

一位酷爱做饭的程序员,立志用动画将算法说的通俗易懂。我的面试网站 www.chengxuchu.com

10,727 1,560 Updated May 3, 2025

The Fast Cross-Platform Package Manager

C++ 7,994 440 Updated Apr 13, 2026

A network filesystem client to connect to SSH servers

C 7,365 533 Updated Nov 11, 2025

🔬 Path to a free self-taught education in Bioinformatics!

6,775 1,081 Updated Apr 8, 2024

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Python 3,675 781 Updated Mar 19, 2026

A short guide on features of Python 3 with examples

3,600 192 Updated May 3, 2021

Single-cell analysis in Python. Scales to >100M cells.

Python 2,416 734 Updated Apr 13, 2026

An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

C++ 2,324 371 Updated Apr 14, 2026

A versatile pairwise aligner for genomic and spliced nucleotide sequences

C 2,154 458 Updated Apr 14, 2026

RStudio add-in to make plots interactively with ggplot2

R 1,844 243 Updated Feb 21, 2025

Geocomputation with R: an open source book

R 1,751 613 Updated Apr 2, 2026

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation

Go 1,538 176 Updated Mar 31, 2026

Unix, R and python tools for genomics and data science

Shell 1,377 367 Updated Aug 25, 2025

This repository contains the text for the Tiny Python 3.6 Notebook.

1,342 184 Updated Jan 18, 2021

tools for working with genome variation graphs

C++ 1,309 215 Updated Apr 13, 2026

Accelerated BLAST compatible local sequence aligner.

C++ 1,282 190 Updated Mar 28, 2026

📊 A universal enrichment tool for interpreting omics data

R 1,196 266 Updated Apr 12, 2026

RNAseq analysis notes from Ming Tang

Python 1,079 324 Updated Nov 15, 2021

Applied Computational Genomics Course at UU: Spring 2020

HTML 1,079 240 Updated Apr 5, 2024

A list of interesting genome browser and genome visualization programs

TypeScript 1,063 135 Updated Mar 26, 2026

GUI/CommandLine Tool Box for biologistists to utilize NGS data.

Shell 1,040 197 Updated Apr 5, 2026

The complete sequence of a human genome

1,026 100 Updated Jul 14, 2025

⚡ ♒ Rapid prokaryotic genome annotation

Perl 972 235 Updated Jan 6, 2026

SPAdes Genome Assembler

C++ 928 159 Updated Apr 13, 2026
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