Stars
a UNIX shell toolkit for processing and analyzing multiple sequence alignments and phylogenies
A tool for estimating the copy number of large tandem repeats
Fast method for inferring cancer clonal population structure from SNV data.
Accurate Bayesian reconstruction of cancer phylogenies from bulk sequencing.
WinPCA. A package for windowed principal component analysis.
Infering ancestral synteny with hierarchical orthologous groups
Reconstruct the three-dimensional structure of extrachromosomal DNA
Evolutionary frequency visualization tool of temporal data
Graph Variant Benchmarking for the HPRC Release 2
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
A computational framework for tetrad-based genotyping & recombination landscape analysis
This is the standalone version of the EviAnn pipeline
Basecalling configuration prediction through FASTQ files
an interactive visualization and interpretation framework of reference-projected pangenome graphs
This is for discussion the cut-edge publications, ideas, and other interesting point about generative AI and Omics
Tumor-normal variant calling workflow using HiFi reads
FLAMES: Accurate gene prioritization in GWAS loci
Performance-critical parts of the Arima mapping pipeline written in C with htslib
LRSDAY: Long-read Sequencing Data Analysis for Yeasts
An integrated computational framework for comprehensive transcriptome analyses with Nanopore direct-RNA sequencing data
A list of interesting genome browser and genome visualization programs
An R package to visualize chromosome scale repeat patterns and predict centromere locations.
A Tidyverse-based workflow for local synteny visualization
Diamond2GO is a set of tools that can rapidly assign Gene Ontology (GO) terms and perform functional enrichment for large-scale functional genomics datasets.