GRIDSS: the Genomic Rearrangement IDentification Software Suite

Various algorithms for analysing genomics data

Jasmine: SV Merging Across Samples

Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.

High throughput protein function annotation with Human Readable Description (HRDs) and Gene Ontology (GO) Terms.

Code for phasing SVs with SNPs

Efficient and accurate pathogenicity prediction for coding and regulatory structural variants in long-read genome sequencing

Multi-sample cancer phylogeny reconstruction

A module for improving the insertion sequences of structural variant calls

PanTools

classification of higher-order structural variants from breakpoint data

Isoform function prediction and interpretation

H-PoP and H-PoPG: Heuristic Partitioning Algorithms for Single Individual Haplotyping of Polyploids

YOC is a whole genome alignment tool designed for collinear genomes.