RStudio add-in to make plots interactively with ggplot2

Geocomputation with R: an open source book

📊 A universal enrichment tool for interpreting omics data

🎄Visualization and annotation of phylogenetic trees

Perceptions of Probability and Numbers

A grammar of graphics for comparative genomics

Publication-ready volcano plots with enhanced colouring and labeling

karyoploteR - An R/Bioconductor package to plot arbitrary data along the genome

Multi-subject Single Cell Deconvolution

Personal Cancer Genome Reporter (PCGR)

Programs to analyse NGS data for population genetics purposes

Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project

VirFinder: a novel k-mer based tool for identifying viral sequences from assembled metagenomic data

Reference-free profiling of polyploid genomes

treeWAS: A Phylogenetic Tree-Based Tool for Genome-Wide Association Studies in Microbes

Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2

Read, manipulate and visualize 'Pairwise mApping Format' data in R

RepeatIdentifier

biodiversity genomics course by Nicol Rueda, Karin Näsvall, Fernando Seixas and Joana Meier from the Wellcome Sanger Institute

a fully Bayesian approach to deconvolve tumor microenvironment

A framework to infer mutational signatures in cancer over time

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

An R package to visualize chromosome scale repeat patterns and predict centromere locations.

scNMT-seq gastrulation

Flexible Bayesian inference of mutational signatures

A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations