Github Pages template based upon HTML and Markdown for personal, portfolio-based websites.

📐 Jekyll theme for building a personal site, blog, project documentation, or portfolio.

Applied Computational Genomics Course at UU: Spring 2020

Plotting scripts for long read sequencing data

Tutorials on phylogenetic and phylogenomic inference

Web application to explore the Sequence Read Archive.

Make colorful identity heatmaps of genomic sequence

JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

Main repository for Drews et al. (Nature, 2022)

A neural network framework for predicting the Hi-C chromatin interactions from megabase scale DNA sequence

Validate and edit small eukaryotic genome assemblies

A fast and accurate deconvolution algorithm based on regularized matrix completion algorithm (ENIGMA)

Compare different genome alignment tools using a wide range of genomes with different complexities.

A configurable codebase for launching organism specific WikiGenomes spinoff applications (e.g. ChlamBase.org) This is a web application framework for creating a model organism database leveraging t…